Source code for nigsp.utils

#!/usr/bin/env python3
"""
General utils.

Attributes
----------
LGR
    Logger
"""

import logging
from itertools import tee

from numpy import asarray, empty, ndarray, prod

LGR = logging.getLogger(__name__)


[docs] def pairwise(iterable): """ Recreate `itertools.pairwise` behaviour for python < 3.10 compatibility. Parameters ---------- iterable : any iterable object The object to iterate through. Returns ------- tuple The couple of adjacent elements. Notes ----- The original function is: https://docs.python.org/3/library/itertools.html#itertools.pairwise Credit to the Python Software Foundation, this function is under BSD licence. To be replaced by itertools' pairwise import once support for python < 3.10 is dropped. """ a, b = tee(iterable, 2) next(b, None) return zip(a, b)
[docs] def change_var_type(var, dtype, varname="an input variable", stop=True, silent=False): """ Make sure `var` is of type `dtype`. Parameters ---------- var : str, int, or float Variable to change type of. dtype : type Type to change ``var`` to. varname : str, optional The name of the variable. stop : bool, optional If True, raises TypeError if ``var`` is not of ``dtype``. silent : bool, optional If True, don't return any message. Returns ------- int, float, str, list, or var The given `var` in the given ``dtype``, or ``var`` if ``''`` or None Raises ------ NotImplementedError If dtype is not int, float, str, or list. TypeError If variable var is not of type and stop is True. """ if type(var) is not dtype and stop: if varname != "an input variable": varname = f"variable {varname}" raise TypeError(f"{varname} is not of type {dtype}") if dtype is int: tmpvar = int(var) elif dtype is float: tmpvar = float(var) elif dtype is str: tmpvar = str(var) elif dtype is ndarray: tmpvar = asarray(var) elif dtype is list: if isinstance(var, list): tmpvar = var else: tmpvar = [var] else: raise NotImplementedError(f"Type {dtype.__name__} not supported") if type(tmpvar) is not type(var): if varname != "an input variable": varname = f"variable {varname}" msg = f"Changing type of {varname} from {type(var)} to {dtype}" if silent: LGR.debug(msg) else: LGR.warning(msg) return tmpvar
[docs] def prepare_ndim_iteration(data, idx): """Reshape data to have ``idx+1`` dimensions. This should allow iterations over unknown numbers of dimensions above idx when needed. Parameters ---------- data : array The data to reiterate over. idx : int The number of dimensions that should be fixed. Returns ------- array, array The reshaped data and an empty array like it. """ if data.ndim > idx + 1: new_shape = list(data.shape[:idx]) + [prod(data.shape[idx:])] data = data.reshape(new_shape) return data, empty(data.shape, dtype="float32")
""" Copyright 2022, Stefano Moia. Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. """