nigsp.blocks.nifti_to_timeseries¶

nigsp.blocks.nifti_to_timeseries(fname, atlasname)[source]¶

Read a nifti file and returns a normalised timeseries from an atlas.

Parameters:

fnamestr or os.PathLike: Filename (and path) of a functional timeseries nifti dataset.
atlasnamestr or os.PathLike: Filename (and path) of an atlas nifti dataset.

Returns:

numpy.ndarray: The average parcel timeseries from the given atlas.
numpy.ndarray: The atlas data.
3D Nifti1Image: The full nifti image of the atlas.